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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22243934_22244540_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22243934 - 22244540
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTAACA
Flanking Amino Acid:
YNTERIHVLSGYLMCSHAED
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
85.2
32.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.9
0.76
0.9
81.2
35
Minor 5ss
38.2
-1.3
3.4
49.9
46.4
Minor BPS
80.5
0.95
1
83.59
30.1

Associated Gene:

Gene:
WDR26
Ensembl Gene ID:
ENSAPLG00000013139
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022512
22225340 - 22253388
28049
ENSAPLT00000013703
22225340 - 22253578
28239