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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22281489_22304447_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22281489 - 22304447
Intron Length:
22959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
AATTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTAACATTCATT
Flanking Amino Acid:
AALIFFAIWHIIAFDELRTD
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
77
31.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
81.2
0.7
0.9
77.7
40.7
Minor 5ss
34
-1.8
2.7
42.8
36.9
Minor BPS
50.6
0.1
2.1
74.97
41.6

Associated Gene:

Gene:
CNIH3
Ensembl Gene ID:
ENSAPLG00000013264
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013804
22281408 - 22324181
42774