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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22304517_22305636_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22304517 - 22305636
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TTTTTCTTGACA
Flanking Amino Acid:
PIDQCNPVHARERLRNIERI
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
86.3
0.82
0.9
84
31
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
85.2
1.1
0.9
90.04
24.3

Associated Gene:

Gene:
CNIH3
Ensembl Gene ID:
ENSAPLG00000013264
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013804
22281408 - 22324181
42774