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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22305685_22318919_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22305685 - 22318919
Intron Length:
13235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TTTTACTGACAT
Flanking Amino Acid:
IERICFLLRKLVLPEYSIHS
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.4
26.8
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
79.7
0.67
0.8
77.7
31.1
Minor 5ss
32.5
-2
3.3
40.3
40.1
Minor BPS
52.2
0.15
2
79.58
41.7

Associated Gene:

Gene:
CNIH3
Ensembl Gene ID:
ENSAPLG00000013264
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013804
22281408 - 22324181
42774