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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22319033_22321224_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22319033 - 22321224
Intron Length:
2192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
GTCATTTCAGGT
Flanking Amino Acid:
NVPLLFYHFWRYFRCPADSS
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
86.6
0.82
0.7
84.2
23.8
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
40.4
-0.6
1.9
52.77
42.6

Associated Gene:

Gene:
CNIH3
Ensembl Gene ID:
ENSAPLG00000013264
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013804
22281408 - 22324181
42774