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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22321369_22323575_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22321369 - 22323575
Intron Length:
2207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTCTTTTACAT
Flanking Amino Acid:
YLLSFFYYLYCMIYTLVSS*
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.8
0.69
0.9
78.6
33.9
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
57.2
0.3
1.7
77.95
38.5

Associated Gene:

Gene:
CNIH3
Ensembl Gene ID:
ENSAPLG00000013264
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013804
22281408 - 22324181
42774