About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22323657_22323820_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
22323657 - 22323820
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GCTGAGTTAACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
89.1
0.88
0.7
88.2
29.1
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
48.4
-0
2.3
69.33
47.1

Associated Gene:

Gene:
CNIH3
Ensembl Gene ID:
ENSAPLG00000013264
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013804
22281408 - 22324181
42774