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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22341767_22342878_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22341767 - 22342878
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTAAA
5'SS Class:
major
3'SS Sequence:
TGTTTGATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TTTCCTACAATT
Flanking Amino Acid:
IKEEGMCFGKIHPGKHQEER
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
76.2
34.7
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
77.2
0.61
0.9
74.7
40
Minor 5ss
36.1
-1.6
3.1
45.8
42.8
Minor BPS
54.9
0.23
1.8
78.83
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024602
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032103
22338261 - 22364631
26371