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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22346302_22347339_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22346302 - 22347339
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGATTTTC
5'SS Class:
major
3'SS Sequence:
CTTCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
CTTCTTTTCACA
Flanking Amino Acid:
MARLQKYALTRPLLLKDSGE
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
71.5
34.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
87.1
0.83
0.7
82.8
25.8
Minor 5ss
39.9
-1.1
2.9
53.5
43.8
Minor BPS
54.9
0.15
1.8
67.58
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024602
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032103
22338261 - 22364631
26371