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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22359323_22369411_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22359323 - 22369411
Intron Length:
10089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTCG
5'SS Class:
major
3'SS Sequence:
TTCCTAACCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTTTTCCTAACC
Flanking Amino Acid:
CKKKYGLAWERIPGFINSH*
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
58.5
40.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
73.5
0.53
0.8
70.8
33.6
Minor 5ss
43.2
-0.7
3
56.7
47.6
Minor BPS
75.4
0.78
1.6
86.87
29.8

Associated Gene:

Gene:
LBR
Ensembl Gene ID:
ENSAPLG00000013563
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014183
22359295 - 22380110
20816