About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22362258_22369411_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22362258 - 22369411
Intron Length:
7154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTCG
5'SS Class:
major
3'SS Sequence:
CTGTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGTTTTTAACA
Flanking Amino Acid:
CKKKYGLAWERKWT*
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
58.5
40.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80
0.68
0.9
76.7
36.2
Minor 5ss
43.2
-0.7
3
56.7
47.6
Minor BPS
72.6
0.7
1.2
74.03
38.5

Associated Gene:

Gene:
LBR
Ensembl Gene ID:
ENSAPLG00000013563
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022029
22362245 - 22381489
19245