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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22369527_22370677_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22369527 - 22370677
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTTCCTCACAT
Flanking Amino Acid:
IMALAWSLPCGFNHILPYFY
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
56.5
0.28
2
78.72
42.9

Associated Gene:

Gene:
LBR
Ensembl Gene ID:
ENSAPLG00000013563
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014183
22359295 - 22380110
20816
ENSAPLT00000028481
22369291 - 22381489
12199
ENSAPLT00000022871
22369291 - 22404414
35124
ENSAPLT00000022029
22362245 - 22381489
19245
ENSAPLT00000020121
22367098 - 22380110
13013
ENSAPLT00000030205
22367543 - 22404326
36784