About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22370981_22371918_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22370981 - 22371918
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AGCAAAATAATT
Flanking Amino Acid:
PAAAAIIILNGIGYYIFRSA
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
41.7
-0.5
1.9
55.57
39.8

Associated Gene:

Gene:
LBR
Ensembl Gene ID:
ENSAPLG00000013563
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020121
22367098 - 22380110
13013
ENSAPLT00000030205
22367543 - 22404326
36784
ENSAPLT00000014183
22359295 - 22380110
20816
ENSAPLT00000028481
22369291 - 22381489
12199
ENSAPLT00000022871
22369291 - 22404414
35124
ENSAPLT00000022029
22362245 - 22381489
19245