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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22372317_22372691_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22372317 - 22372691
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
CELRPGLIGWVVINLVMLLA
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.9
42.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.7
0.65
0.9
75.4
38.6
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
LBR
Ensembl Gene ID:
ENSAPLG00000013563
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022871
22369291 - 22404414
35124
ENSAPLT00000022029
22362245 - 22381489
19245
ENSAPLT00000020121
22367098 - 22380110
13013
ENSAPLT00000030205
22367543 - 22404326
36784
ENSAPLT00000014183
22359295 - 22380110
20816
ENSAPLT00000028481
22369291 - 22381489
12199