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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22375415_22376199_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22375415 - 22376199
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TTTTGTTGAAAC
Flanking Amino Acid:
ALFYLLPIGKVVEGLPLSNG
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84
30.2
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
76.6
0.6
0.8
69.8
36.6
Minor 5ss
45.5
-0.5
2.9
64.1
47.4
Minor BPS
54.5
0.12
2
72.41
38.6

Associated Gene:

Gene:
LBR
Ensembl Gene ID:
ENSAPLG00000013563
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014183
22359295 - 22380110
20816
ENSAPLT00000028481
22369291 - 22381489
12199
ENSAPLT00000022871
22369291 - 22404414
35124
ENSAPLT00000022029
22362245 - 22381489
19245
ENSAPLT00000020121
22367098 - 22380110
13013
ENSAPLT00000030205
22367543 - 22404326
36784