Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22378866_22379945_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22378866 - 22379945

Intron Length:

1080

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTATG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTCTGTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACAAGAT

U12 Branch Point Sequence:

TAAGACAAGATT

Flanking Amino Acid:

ELALKESDIKSQSSFKPRKS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.2

1.02

0.7

86.9

30.1

Major BPS

48.4

-0.1

1.1

37.8

Major PPT

79.6

0.67

0.9

81.2

30.8

Minor 5ss

33.9

-1.8

2.8

41.5

45.1

Minor BPS

39.5

-0.7

54.35

41.3

Associated Gene:

Gene:

LBR

Ensembl Gene ID:

ENSAPLG00000013563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014183

22359295 - 22380110

20816

ENSAPLT00000028481

22369291 - 22381489

12199

ENSAPLT00000022871

22369291 - 22404414

35124

ENSAPLT00000022029

22362245 - 22381489

19245

ENSAPLT00000020121

22367098 - 22380110

13013

ENSAPLT00000030205

22367543 - 22404326

36784