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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22433611_22440056_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22433611 - 22440056
Intron Length:
6446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCCAT
5'SS Class:
major
3'SS Sequence:
TTTTGTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGACCAGTAACT
Flanking Amino Acid:
VNGSKSPVISRPKSTPTGQP
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
61.8
44.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
84
0.76
0.8
78.5
34.7
Minor 5ss
38.5
-1.3
3.3
56.5
47.7
Minor BPS
49
0
2.3
72.9
43

Associated Gene:

Gene:
ENAH
Ensembl Gene ID:
ENSAPLG00000014191
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045667
22432338 - 22514695
82358