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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22437854_22440056_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22437854 - 22440056
Intron Length:
2203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCCAT
5'SS Class:
major
3'SS Sequence:
CCCCTACTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTCCCCTACTC
Flanking Amino Acid:
VNGSKSPVISRRESPWKNLL
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
61.8
44.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
66.8
0.38
0.8
60.5
28.2
Minor 5ss
38.5
-1.3
3.3
56.5
47.7
Minor BPS
49.4
-0
2
64.29
41.6

Associated Gene:

Gene:
ENAH
Ensembl Gene ID:
ENSAPLG00000014191
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028107
22432338 - 22514695
82358
ENSAPLT00000021053
22429258 - 22530010
100753
ENSAPLT00000014885
22429258 - 22530010
100753