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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22444997_22445393_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22444997 - 22445393
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
ATCTTGGTAACT
Flanking Amino Acid:
MEEMSALLARRRRIAEKGST
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
78.3
0.64
0.8
72.4
32.4
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
47.4
-0.1
2.6
73.16
44.2

Associated Gene:

Gene:
ENAH
Ensembl Gene ID:
ENSAPLG00000014191
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045667
22432338 - 22514695
82358
ENSAPLT00000028107
22432338 - 22514695
82358
ENSAPLT00000021053
22429258 - 22530010
100753
ENSAPLT00000014885
22429258 - 22530010
100753