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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22446106_22447912_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22446106 - 22447912
Intron Length:
1807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGATACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
AAATCCTTAATA
Flanking Amino Acid:
SQPIEPTTQQGVVQGPPAPP
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
70
0.45
1
63.8
41.6
Minor 5ss
36.2
-1.6
3.5
48.3
47.3
Minor BPS
77.9
0.87
1.1
76.32
34.1

Associated Gene:

Gene:
ENAH
Ensembl Gene ID:
ENSAPLG00000014191
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021053
22429258 - 22530010
100753