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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22456732_22469041_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22456732 - 22469041
Intron Length:
12310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TCTGTCTTCACT
Flanking Amino Acid:
ALEVLNSQEAGPTLPRQNSQ
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
78.7
0.65
0.8
70.6
35.1
Minor 5ss
38.9
-1.2
3
50.6
40.1
Minor BPS
61.1
0.43
1.9
78.66
44.1

Associated Gene:

Gene:
ENAH
Ensembl Gene ID:
ENSAPLG00000014191
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045667
22432338 - 22514695
82358
ENSAPLT00000028107
22432338 - 22514695
82358
ENSAPLT00000021053
22429258 - 22530010
100753
ENSAPLT00000014885
22429258 - 22530010
100753