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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22469220_22470542_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22469220 - 22470542
Intron Length:
1323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTACTTTAATT
Flanking Amino Acid:
VVGRKIQDHQVVINCAIPKG
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
100
1.24
0.5
100
0
Major PPT
78.6
0.64
0.8
74.1
35.1
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
71.2
0.74
1.2
78.71
38

Associated Gene:

Gene:
ENAH
Ensembl Gene ID:
ENSAPLG00000014191
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014885
22429258 - 22530010
100753
ENSAPLT00000045667
22432338 - 22514695
82358
ENSAPLT00000028107
22432338 - 22514695
82358
ENSAPLT00000021053
22429258 - 22530010
100753