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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2254444_2270161_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2254444 - 2270161
Intron Length:
15718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
TTTTGTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAATCATGACAT
Flanking Amino Acid:
VIAERRSHLEKYLRSFFAAM
Intron Amino Acid Position:
1270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
85
0.79
0.8
80.2
32
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
45.8
-0.2
2
66.18
43.2

Associated Gene:

Gene:
KIF16B
Ensembl Gene ID:
ENSAPLG00000012639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030926
2254285 - 2394027
139743
ENSAPLT00000026847
2254285 - 2394027
139743
ENSAPLT00000020499
2254285 - 2394027
139743
ENSAPLT00000034829
2254285 - 2394027
139743
ENSAPLT00000013213
2253568 - 2394027
140460
ENSAPLT00000031256
2254285 - 2394027
139743