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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22552340_22554296_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22552340 - 22554296
Intron Length:
1957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTCTCTTACAG
Flanking Amino Acid:
LCIKVTDDVACLLYRTDQAQ
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
89.3
0.88
0.6
83.8
24.5
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
55.6
0.04
1.8
65.72
41.9

Associated Gene:

Gene:
SRP9
Ensembl Gene ID:
ENSAPLG00000015368
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016004
22550152 - 22554416
4265