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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22580558_22580927_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22580558 - 22580927
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCACTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTAGTTCTAACT
Flanking Amino Acid:
FRNLEDGGLERKFNLDDLLT
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
85.2
32.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
75.3
0.57
0.9
73
36.3
Minor 5ss
42.3
-0.9
3.5
64.1
47.4
Minor BPS
56.9
0.29
1.8
76.75
40

Associated Gene:

Gene:
EPHX1
Ensembl Gene ID:
ENSAPLG00000015369
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016042
22562544 - 22582864
20321