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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22607543_22608752_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22607543 - 22608752
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTACCTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTTATTTACCT
Flanking Amino Acid:
GVVFDVTSGKEFYGKGAPYN
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.8
1.13
0.8
81.8
38.5
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
72.8
0.51
1
68.8
37
Minor 5ss
33.5
-1.9
4
48.7
47.5
Minor BPS
68
0.64
1.8
88.66
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022272
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033307
22606472 - 22609054
2583