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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22629773_22636127_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22629773 - 22636127
Intron Length:
6355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGATT
5'SS Class:
major
3'SS Sequence:
TACACTTCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAC
U12 Branch Point Sequence:
GTTACCTTACAC
Flanking Amino Acid:
LTNSYKAERQSPCNYCSARP
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
75.5
40.1
Major BPS
60.5
0.26
1.1
70.3
34.5
Major PPT
75.8
0.58
0.9
68.7
36.8
Minor 5ss
37.2
-1.4
3.5
57.6
46.7
Minor BPS
58.1
0.23
1.8
69.55
41.2

Associated Gene:

Gene:
PPP2R5A
Ensembl Gene ID:
ENSAPLG00000015734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016430
22629636 - 22677249
47614