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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22636230_22638387_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
22636230 - 22638387
Intron Length:
2158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTATGTAAT
5'SS Class:
weak_major
3'SS Sequence:
TCTTCCGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTTGAGTAATT
Flanking Amino Acid:
LYKISKEHWNPTIVALVYNV
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
70.9
40.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81.5
0.71
0.8
72.9
37.4
Minor 5ss
45.4
-0.5
2.6
64
40.7
Minor BPS
46.3
-0.2
2.5
73.64
43.4

Associated Gene:

Gene:
PPP2R5A
Ensembl Gene ID:
ENSAPLG00000015734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019661
22635256 - 22669642
34387
ENSAPLT00000019511
22635219 - 22662411
27193
ENSAPLT00000016430
22629636 - 22677249
47614
ENSAPLT00000041184
22635163 - 22677249
42087