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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22638516_22638594_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22638516 - 22638594
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGGTTTTTGACA
Flanking Amino Acid:
SKCVSSSHFQVAERALYFWN
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
87.4
0.84
0.7
85.3
27.7
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
66.4
0.51
1.2
69.98
36.5

Associated Gene:

Gene:
PPP2R5A
Ensembl Gene ID:
ENSAPLG00000015734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041184
22635163 - 22677249
42087
ENSAPLT00000019661
22635256 - 22669642
34387
ENSAPLT00000019511
22635219 - 22662411
27193
ENSAPLT00000016430
22629636 - 22677249
47614