Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22638715_22639691_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22638715 - 22639691

Intron Length:

977

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTGGTTTT

5'SS Class:

major

3'SS Sequence:

TTTATACCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

ATTTCTTTTATA

Flanking Amino Acid:

FWPKTCSQKEVMFLGEIEEI

Intron Amino Acid Position:

317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.64

1.2

79.9

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

0.52

67.7

37.9

Minor 5ss

41.1

-1

3.1

58.6

Minor BPS

68.2

0.57

1.5

77.18

34.1

Associated Gene:

Gene:

PPP2R5A

Ensembl Gene ID:

ENSAPLG00000015734

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041184

22635163 - 22677249

42087

ENSAPLT00000019661

22635256 - 22669642

34387

ENSAPLT00000019511

22635219 - 22662411

27193

ENSAPLT00000016430

22629636 - 22677249

47614