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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22646217_22647183_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22646217 - 22647183
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCATGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAATAAAA
Flanking Amino Acid:
GVAELLEILGSIINGFALPL
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83
0.74
0.9
80.3
37.1
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
49.2
-0
2.1
72.62
38.1

Associated Gene:

Gene:
PPP2R5A
Ensembl Gene ID:
ENSAPLG00000015734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041184
22635163 - 22677249
42087
ENSAPLT00000019661
22635256 - 22669642
34387
ENSAPLT00000019511
22635219 - 22662411
27193
ENSAPLT00000016430
22629636 - 22677249
47614