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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22649940_22654861_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22649940 - 22654861
Intron Length:
4922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATGTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTCAAAATT
Flanking Amino Acid:
TLEASWPHIQLVYEFFLRFL
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
79.2
29
Major BPS
100
1.24
0.5
100
0
Major PPT
77.9
0.63
0.9
72.9
37.3
Minor 5ss
35
-1.7
3.2
48.2
47.9
Minor BPS
53.3
0.18
1.9
75.95
41.4

Associated Gene:

Gene:
PPP2R5A
Ensembl Gene ID:
ENSAPLG00000015734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041184
22635163 - 22677249
42087
ENSAPLT00000019661
22635256 - 22669642
34387
ENSAPLT00000019511
22635219 - 22662411
27193
ENSAPLT00000016430
22629636 - 22677249
47614