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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22654964_22659539_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22654964 - 22659539
Intron Length:
4576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTAAACTTCATT
Flanking Amino Acid:
ESAYADIVKMISSNIFRTLP
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
92
0.94
0.7
87.5
30
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
52.1
0.15
2
74.74
41.9

Associated Gene:

Gene:
PPP2R5A
Ensembl Gene ID:
ENSAPLG00000015734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019661
22635256 - 22669642
34387
ENSAPLT00000019511
22635219 - 22662411
27193
ENSAPLT00000016430
22629636 - 22677249
47614
ENSAPLT00000041184
22635163 - 22677249
42087