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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22659737_22662227_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22659737 - 22662227
Intron Length:
2491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
TTTCCTTTTACA
Flanking Amino Acid:
CHYFMISPCHYATSNEQQDL
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
77.8
31.2
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
92.1
0.95
0.6
87.3
23.1
Minor 5ss
34.5
-1.8
2.9
48.3
41.8
Minor BPS
69.9
0.62
1.6
80.97
34

Associated Gene:

Gene:
PPP2R5A
Ensembl Gene ID:
ENSAPLG00000015734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019511
22635219 - 22662411
27193