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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22659737_22669145_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22659737 - 22669145
Intron Length:
9409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
TTTCCTTTTACA
Flanking Amino Acid:
NSLFPLRSMADATSNEQQDL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
92.1
0.95
0.6
87.3
23.1
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
69.9
0.62
1.6
80.97
34

Associated Gene:

Gene:
PPP2R5A
Ensembl Gene ID:
ENSAPLG00000015734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019661
22635256 - 22669642
34387