About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22716664_22718204_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22716664 - 22718204
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTCTA
Flanking Amino Acid:
AAAVATSPKNAVTTPSSMRK
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.1
41.9
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
34.5
-1.8
3.3
44.8
43.4
Minor BPS
42.6
-0.5
3.5
69.65
37.1

Associated Gene:

Gene:
DTL
Ensembl Gene ID:
ENSAPLG00000016053
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042058
22716595 - 22738636
22042
ENSAPLT00000016765
22716595 - 22738811
22217