About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22725233_22729510_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22725233 - 22729510
Intron Length:
4278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACGC
5'SS Class:
strong_major
3'SS Sequence:
ATGGAATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATACTTATTT
Flanking Amino Acid:
SSDCNAYIWKVSEPSLPPRI
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
65.9
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.5
0.39
1.1
58.4
45.7
Minor 5ss
26.9
-2.7
2.9
33.5
41.8
Minor BPS
63.8
0.51
1.8
82.01
39.4

Associated Gene:

Gene:
DTL
Ensembl Gene ID:
ENSAPLG00000016053
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016765
22716595 - 22738811
22217
ENSAPLT00000042058
22716595 - 22738636
22042