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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22729624_22732061_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22729624 - 22732061
Intron Length:
2438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTTTCACT
Flanking Amino Acid:
FNMTSLKTTPVAVFSGHQNS
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
91.7
0.94
0.6
87.8
22.4
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
69.6
0.7
1.8
88.46
36.7

Associated Gene:

Gene:
DTL
Ensembl Gene ID:
ENSAPLG00000016053
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042058
22716595 - 22738636
22042
ENSAPLT00000016765
22716595 - 22738811
22217