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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22734262_22735221_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22734262 - 22735221
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTAAG
Flanking Amino Acid:
QNLRGLAPLVDFQQSVTVVL
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.73
1
77.9
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.9
91.1
21.3
Minor 5ss
39
-1.2
3.1
50.7
40.4
Minor BPS
62.7
0.26
1.8
72.54
40

Associated Gene:

Gene:
DTL
Ensembl Gene ID:
ENSAPLG00000016053
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042058
22716595 - 22738636
22042
ENSAPLT00000016765
22716595 - 22738811
22217