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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22737269_22737606_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22737269 - 22737606
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ATGCACTGAACT
Flanking Amino Acid:
AQTTSKVIFREWQAHSNAVF
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
73.2
0.52
1
73.6
37
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
57.5
0.31
1.7
74.46
41.5

Associated Gene:

Gene:
DTL
Ensembl Gene ID:
ENSAPLG00000016053
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016765
22716595 - 22738811
22217