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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22738637_22738756_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22738637 - 22738756
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
GTCTCGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTCAC
U12 Branch Point Sequence:
GCGTGGTCACGG
Flanking Amino Acid:
RAAATSAVPPRQPSALPLQH
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.3
66.2
39.6
Major BPS
59.8
0.24
1.3
63.1
44.5
Major PPT
78.9
0.65
0.9
72.4
37.7
Minor 5ss
33.4
-1.9
2.7
42.8
36.9
Minor BPS
28.3
-1.7
2.4
27.1
42.3

Associated Gene:

Gene:
DTL
Ensembl Gene ID:
ENSAPLG00000016053
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016765
22716595 - 22738811
22217