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Intron Name: Anas_platyrhynchos_platyrhynchos_3_22740607_22741099_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
22740607 - 22741099

Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAA|GTAAGATGT

5'SS Class:
strong_major

3'SS Sequence:
ATTTTCTCTACAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
AATTTAT

U12 Branch Point Sequence:
TCACCCTTACTT

Flanking Amino Acid:
FAAANFSAQSKDFAAGICNK

Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.3
0.74
0.9
75.3
35.6

Major BPS
79.9
0.74
0.9
69.7
37.1

Major PPT
87
0.83
0.7
81.2
30.2

Minor 5ss
41.4
-1
3.1
56.7
41.9

Minor BPS
61.5
0.44
1.6
74.08
43

Associated Gene:

Gene:
INTS7

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

22738608 - 22779381
40774

22738608 - 22759636
21029

22738608 - 22779381
40774

22738608 - 22759792
21185

22738608 - 22759659
21052