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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22741844_22743276_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22741844 - 22743276
Intron Length:
1433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCTCTTAATT
Flanking Amino Acid:
ASSLVDIPKQVQLLLQYLKN
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.7
34.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.6
0.71
0.9
75.8
37.9
Minor 5ss
40.2
-1.1
3.1
59.2
45.2
Minor BPS
82.6
1.1
1
93.07
28.2

Associated Gene:

Gene:
INTS7
Ensembl Gene ID:
ENSAPLG00000016233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033903
22738608 - 22779381
40774
ENSAPLT00000029985
22738608 - 22759636
21029
ENSAPLT00000016953
22738608 - 22779381
40774
ENSAPLT00000043984
22738608 - 22759792
21185