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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22743400_22745817_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22743400 - 22745817
Intron Length:
2418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTATGCA
5'SS Class:
major
3'SS Sequence:
TCTTAATCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTTCTCTTAATC
Flanking Amino Acid:
PHTWTRENIQALCESALHTP
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.2
62.2
36.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
76.3
0.59
0.8
70.7
34.7
Minor 5ss
34.8
-1.7
3
42.3
44.4
Minor BPS
72.5
0.68
1.2
75.09
35.7

Associated Gene:

Gene:
INTS7
Ensembl Gene ID:
ENSAPLG00000016233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033903
22738608 - 22779381
40774
ENSAPLT00000029985
22738608 - 22759636
21029
ENSAPLT00000016953
22738608 - 22779381
40774
ENSAPLT00000043984
22738608 - 22759792
21185