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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22745936_22746642_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22745936 - 22746642
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
AIKQYFSSAPGTAATTARSF
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.2
0.7
0.8
81.3
29.6
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
INTS7
Ensembl Gene ID:
ENSAPLG00000016233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043984
22738608 - 22759792
21185
ENSAPLT00000041675
22738608 - 22759659
21052
ENSAPLT00000033903
22738608 - 22779381
40774
ENSAPLT00000016953
22738608 - 22779381
40774