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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22753503_22754208_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22753503 - 22754208
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTTGACT
Flanking Amino Acid:
LQRCGRISNQMKLSMEEFRN
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.9
90.9
28.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
77.9
0.63
0.8
73.3
31.8
Minor 5ss
37.4
-1.4
3.9
59.2
45.4
Minor BPS
82
1.09
0.9
94.3
25.7

Associated Gene:

Gene:
INTS7
Ensembl Gene ID:
ENSAPLG00000016233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041675
22738608 - 22759659
21052
ENSAPLT00000033903
22738608 - 22779381
40774
ENSAPLT00000029985
22738608 - 22759636
21029
ENSAPLT00000016953
22738608 - 22779381
40774
ENSAPLT00000043984
22738608 - 22759792
21185