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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22754313_22754706_F

Intron Information:

Intron Rank:
15
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
22754313 - 22754706
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TTGTTAATATCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AGTCTCTTAACT
Flanking Amino Acid:
ADSATLRNVELQQQSCLLIS
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
73.5
0.53
1
72.4
41.5
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
76.3
0.9
1.2
84.73
34.9

Associated Gene:

Gene:
INTS7
Ensembl Gene ID:
ENSAPLG00000016233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041675
22738608 - 22759659
21052
ENSAPLT00000033903
22738608 - 22779381
40774
ENSAPLT00000029985
22738608 - 22759636
21029
ENSAPLT00000016953
22738608 - 22779381
40774
ENSAPLT00000043984
22738608 - 22759792
21185