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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22756026_22757313_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22756026 - 22757313
Intron Length:
1288

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTCATTTGATT
Flanking Amino Acid:
NRKYAPVSYLHTACLCSAVI
Intron Amino Acid Position:
926

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
83.2
35.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.5
0.8
0.8
79.9
32.2
Minor 5ss
27.2
-2.6
3.8
39.2
40.5
Minor BPS
57.2
0.31
1.5
73.05
38.3

Associated Gene:

Gene:
INTS7
Ensembl Gene ID:
ENSAPLG00000016233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041675
22738608 - 22759659
21052
ENSAPLT00000033903
22738608 - 22779381
40774
ENSAPLT00000029985
22738608 - 22759636
21029
ENSAPLT00000016953
22738608 - 22779381
40774
ENSAPLT00000043984
22738608 - 22759792
21185