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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22758449_22759348_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22758449 - 22759348
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGTA
5'SS Class:
strong_major
3'SS Sequence:
CGTGTGTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
GTTATATAAAAT
Flanking Amino Acid:
LQSKSGQDYKIPIDNMSNEM
Intron Amino Acid Position:
1021

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
74.8
35.1
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
72.3
0.5
1
68.5
42.1
Minor 5ss
38.9
-1.2
3.6
54.8
49.4
Minor BPS
46.5
-0.1
2
67.84
42.3

Associated Gene:

Gene:
INTS7
Ensembl Gene ID:
ENSAPLG00000016233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029985
22738608 - 22759636
21029
ENSAPLT00000016953
22738608 - 22779381
40774
ENSAPLT00000043984
22738608 - 22759792
21185
ENSAPLT00000041675
22738608 - 22759659
21052