About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_22782591_22808305_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22782591 - 22808305
Intron Length:
25715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TCTTTTTCAATA
Flanking Amino Acid:
ASWGWWAGYTVVEWGDDVKA
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
79.8
0.67
0.8
77.7
29.7
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
62.5
0.39
1.5
70.41
36.7

Associated Gene:

Gene:
LPGAT1
Ensembl Gene ID:
ENSAPLG00000010836
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047457
22782120 - 22844564
62445
ENSAPLT00000011281
22782120 - 22870750
88631